BioPHP script download - BioPHP BioPHP is a collection of tools to help PHP developers write bioinformatics applica

BioPHP is a collection of tools to help PHP developers write bioinformatics applications more rapidly. The BioPHP Project is a non-profit, open source software project that aims to extend the PHP scripting language so it can be used to develop bioinformatics applications. BioPHP is NOT a bioinformatics application. Rather, it is a collection of tools to help PHP developers write bioinformatics applications more rapidly than if they had to start from scratch using "vanilla PHP". It is primarily a tool for developing web-based bioinformatics applications.Features: - read biological data in the GenBank, Swissprot, Fasta, and Clustal ALN formats - allows user to navigate data spread across several flat files. - can do simple sequence analysis tasks such as computing molecular weights, translating codons to amino residues, generating the charge, chemgrp, consensus strings, etc. - can look for patterns in sequences such as start and stop codons, mirrors and palindromes, and other more complex patterns (represented as regular expressions). - can digest a nucleic sequence using one or more restriction enzymes or endonucleases. - can interface with external programs such as Clustal, to align two or more nucleic or protein sequences

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